{
  "_id": "6aca3571fe5cc25786e85290",
  "Type": "Package",
  "Package": "ecoXCorr",
  "Title": "Lagged Cross-Correlation Analysis of Environmental Time Series",
  "Version": "0.2.2",
  "Authors@R": "c(\nperson(\"Nicolas\", \"Moiroux\", , \"nicolas.moiroux@ird.fr\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6755-6167\")),\nperson(\"Colombine\", \"Bartholomée\", , \"colombine.bartholomee@ird.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7291-5195\")),\nperson(\"Paul\", \"Taconet\", , \"paul.taconet@ird.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7429-7204\"))\n)",
  "Description": "Tools for analysing lagged relationships between\nenvironmental variables and ecological or epidemiological time\nseries. The package implements a workflow to aggregate\nmeteorological data over multiple lagged intervals, fit\nregression models, including mixed-effect models using\n'glmmTMB', for each lag window, and visualise varied models\noutcomes (effect strength and direction, model prediction\nerror...) using cross-correlation maps ('CCM').",
  "License": "GPL (>= 3)",
  "URL": "https://github.com/Nmoiroux/ecoXCorr",
  "BugReports": "https://github.com/Nmoiroux/ecoXCorr/issues",
  "RdMacros": "Rdpack",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev zlib1g-dev",
  "Repository": "https://nmoiroux.r-universe.dev",
  "Date/Publication": "2026-05-01 09:46:39 UTC",
  "RemoteUrl": "https://github.com/nmoiroux/ecoxcorr",
  "RemoteRef": "HEAD",
  "RemoteSha": "0936697d8620330696c4e99310e4018be970f244",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 12:50:25 UTC",
    "User": "root"
  },
  "Author": "Nicolas Moiroux [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-6755-6167>),\nColombine Bartholomée [aut] (ORCID:\n<https://orcid.org/0000-0001-7291-5195>),\nPaul Taconet [aut] (ORCID: <https://orcid.org/0000-0001-7429-7204>)",
  "Maintainer": "Nicolas Moiroux <nicolas.moiroux@ird.fr>",
  "_user": "nmoiroux",
  "_type": "src",
  "_file": "ecoXCorr_0.2.2.tar.gz",
  "_fileid": "https://r2.ropensci.org/02771ed184141e362e6b833f84179c7dbad2423e90ccf184a854200fe94e92ff",
  "_filesize": 330006,
  "_sha256": "02771ed184141e362e6b833f84179c7dbad2423e90ccf184a854200fe94e92ff",
  "_expires": "2027-01-18T12:54:07.000Z",
  "_created": "2026-10-10T12:50:25.000Z",
  "_published": "2026-10-10T12:54:09.316Z",
  "_buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 114217115237,
      "time": 176,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11670137689"
    },
    {
      "job": 114217115211,
      "time": 175,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11670836920"
    },
    {
      "job": 114217115239,
      "time": 110,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11670497226"
    },
    {
      "job": 114217115166,
      "time": 141,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11670547220"
    },
    {
      "job": 114216487150,
      "time": 209,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11669982585"
    },
    {
      "job": 114217115248,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11669852956"
    },
    {
      "job": 114217115234,
      "time": 129,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11670322395"
    },
    {
      "job": 114217115241,
      "time": 127,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11670881712"
    },
    {
      "job": 114217115215,
      "time": 134,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11670687101"
    }
  ],
  "_upstream": "https://github.com/nmoiroux/ecoxcorr",
  "_commit": {
    "id": "0936697d8620330696c4e99310e4018be970f244",
    "author": "Nmoiroux <n.moiroux@gmail.com>",
    "committer": "Nmoiroux <n.moiroux@gmail.com>",
    "message": "add revdep\n",
    "time": 1777628799
  },
  "_maintainer": {
    "name": "Nicolas Moiroux",
    "email": "nicolas.moiroux@ird.fr",
    "login": "nmoiroux",
    "bluesky": "@nmoiroux.bsky.social",
    "orcid": "0000-0001-6755-6167",
    "description": "",
    "uuid": 43449799
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "glmmTMB",
      "role": "Imports"
    },
    {
      "package": "performance",
      "role": "Imports"
    },
    {
      "package": "Rdpack",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "nmoiroux",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-06",
      "n": 45
    },
    {
      "week": "2026-07",
      "n": 62
    },
    {
      "week": "2026-08",
      "n": 3
    },
    {
      "week": "2026-09",
      "n": 1
    },
    {
      "week": "2026-12",
      "n": 6
    },
    {
      "week": "2026-13",
      "n": 31
    },
    {
      "week": "2026-14",
      "n": 13
    },
    {
      "week": "2026-15",
      "n": 5
    },
    {
      "week": "2026-18",
      "n": 9
    }
  ],
  "_tags": [
    {
      "name": "v0.1.0",
      "date": "2026-02-04"
    },
    {
      "name": "v0.1.1",
      "date": "2026-02-06"
    },
    {
      "name": "v0.1.2",
      "date": "2026-02-09"
    },
    {
      "name": "v0.1.3",
      "date": "2026-02-10"
    },
    {
      "name": "v0.1.4",
      "date": "2026-02-10"
    },
    {
      "name": "v0.1.5",
      "date": "2026-02-10"
    },
    {
      "name": "v0.1.6",
      "date": "2026-02-11"
    },
    {
      "name": "v0.1.7",
      "date": "2026-02-12"
    },
    {
      "name": "v0.1.8",
      "date": "2026-02-12"
    },
    {
      "name": "v.0.1.81",
      "date": "2026-02-21"
    },
    {
      "name": "v0.1.9",
      "date": "2026-03-16"
    },
    {
      "name": "v0.2.1",
      "date": "2026-04-01"
    },
    {
      "name": "v0.2.2",
      "date": "2026-05-01"
    }
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "nmoiroux",
      "count": 178,
      "uuid": 43449799
    }
  ],
  "_userbio": {
    "uuid": 43449799,
    "type": "user",
    "name": "Nicolas Moiroux",
    "followers": 6
  },
  "_downloads": {
    "count": 368,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ecoXCorr"
  },
  "_devurl": "https://github.com/nmoiroux/ecoxcorr",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ecoXCorr.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/nmoiroux/ecoxcorr",
  "_realowner": "nmoiroux",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.9",
      "date": "2026-03-24"
    },
    {
      "version": "0.2.1",
      "date": "2026-04-01"
    },
    {
      "version": "0.2.2",
      "date": "2026-05-01"
    }
  ],
  "_exports": [
    "aggregate_lagged_intervals",
    "ecoXCorr",
    "ecoXCorrApp",
    "fit_models_by_lag",
    "plotCCM"
  ],
  "_datasets": [
    {
      "name": "albopictusMPL2023",
      "title": "Entomological records of female *Aedes albopictus* in Montpellier (2023)",
      "object": "albopictusMPL2023",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "species",
        "individualCount",
        "eventDate",
        "trap",
        "area",
        "date",
        "ID"
      ],
      "rows": 126,
      "table": true,
      "tojson": true
    },
    {
      "name": "meteoMPL2023",
      "title": "Daily meteorological conditions in Montpellier (2023)",
      "object": "meteoMPL2023",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "date",
        "pres_mean",
        "pres_min",
        "pres_max",
        "wind_mean",
        "wind_min",
        "wind_max",
        "temp_mean",
        "temp_min",
        "temp_max",
        "dew.p_mean",
        "dew.p_min",
        "dew.p_max",
        "rh_mean",
        "rh_min",
        "rh_max",
        "rain_mean",
        "rain_min",
        "rain_max",
        "rain_sum"
      ],
      "rows": 365,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "aggregate_lagged_intervals",
      "title": "Aggregate meteorological time series over multiple lagged time intervals",
      "topics": [
        "aggregate_lagged_intervals"
      ]
    },
    {
      "page": "albopictusMPL2023",
      "title": "Entomological records of female *Aedes albopictus* in Montpellier (2023)",
      "topics": [
        "albopictusMPL2023"
      ]
    },
    {
      "page": "ecoXCorr",
      "title": "Run a complete ecoXCorr analysis: aggregation + lagged modelling",
      "topics": [
        "ecoXCorr"
      ]
    },
    {
      "page": "ecoXCorrApp",
      "title": "Launch the ecoXCorr Shiny application",
      "topics": [
        "ecoXCorrApp"
      ]
    },
    {
      "page": "fit_models_by_lag",
      "title": "Fit regression models by lag window on aggregated meteorological predictors",
      "topics": [
        "fit_models_by_lag"
      ]
    },
    {
      "page": "meteoMPL2023",
      "title": "Daily meteorological conditions in Montpellier (2023)",
      "topics": [
        "meteoMPL2023"
      ]
    },
    {
      "page": "plotCCM",
      "title": "Plot a cross-correlation map (CCM) from lagged regression results",
      "topics": [
        "plotCCM"
      ]
    }
  ],
  "_readme": "https://github.com/nmoiroux/ecoxcorr/raw/HEAD/README.md",
  "_rundeps": [
    "backports",
    "base64enc",
    "bayestestR",
    "boot",
    "broom",
    "bslib",
    "cachem",
    "cli",
    "colorspace",
    "commonmark",
    "cowplot",
    "cpp11",
    "datawizard",
    "Deriv",
    "digest",
    "doBy",
    "dplyr",
    "farver",
    "fastmap",
    "fontawesome",
    "forecast",
    "fracdiff",
    "fs",
    "generics",
    "ggplot2",
    "glmmTMB",
    "glue",
    "gtable",
    "htmltools",
    "httpuv",
    "insight",
    "isoband",
    "jquerylib",
    "jsonlite",
    "labeling",
    "later",
    "lattice",
    "lifecycle",
    "lme4",
    "lmtest",
    "magrittr",
    "MASS",
    "Matrix",
    "memoise",
    "mgcv",
    "mime",
    "minqa",
    "modelr",
    "nlme",
    "nloptr",
    "nnet",
    "numDeriv",
    "otel",
    "pbkrtest",
    "performance",
    "pillar",
    "pkgconfig",
    "promises",
    "purrr",
    "R6",
    "rappdirs",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rlang",
    "RTMB",
    "S7",
    "sandwich",
    "sass",
    "scales",
    "shiny",
    "sourcetools",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "timeDate",
    "TMB",
    "urca",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xtable",
    "zoo"
  ],
  "_score": 3.6532125137753435,
  "_indexed": true,
  "_nocasepkg": "ecoxcorr",
  "_universes": [
    "nmoiroux"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-10-10T12:52:46.000Z",
      "distro": "resolute",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/1299b1af0ca48ada8a2f48963a95d593439ac45163c2dd163119b804d1f3a083",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.2.2",
      "date": "2026-10-10T12:52:51.000Z",
      "distro": "resolute",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/e3b195d773dfb92b78a91d61c29adba9300b692c9470d5c1326fba82ac594853",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-10-10T12:52:04.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/38e89f26cc38ee84ed2b1875f1df31bd2697aedce86e0232808ae888d3d6ff3b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.2.2",
      "date": "2026-10-10T12:52:24.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/35d2e160882104e0932c7869284b64fe5ee245272ef1e38e5052e270af60e28e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2.2",
      "date": "2026-10-10T12:52:44.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/a34777a1cde0345b825e9bb44232ca65af39b45c3e6ef0083fd4ac8dfa0a93dc",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-10-10T12:51:46.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/d69662439a8ce36e4c4bce5a22132a347351b9da24f32aa8612c1d3b68de06a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-10-10T12:51:50.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/6e2586c64ce3773be37ce54f5191274b92e5802a7126befb6d9a9b9572e12d36",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.2.2",
      "date": "2026-10-10T12:51:57.000Z",
      "commit": "0936697d8620330696c4e99310e4018be970f244",
      "fileid": "https://r2.ropensci.org/6125c8b691504840b1436a6f78dab80cb8b4b976450f6a759b3e0b7d0c1dca2c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nmoiroux/actions/runs/38053232116"
    }
  ]
}